Software

Disease diagnosis using phenotypes and genotypes.

A modular pipeline for the analysis of HELP microarray data; includes graphical and mathematical tools with more general applications. 

Mosaic Aneuploidy Detection and Quantification using Massive Parallel Sequencing Data

A package for the import, quality control, analysis, and visualization of methylation data generated using Sequenom's MassArray platform.

Using the gaiaAssociation package to understand whether sets of genomic loci are enriched at the regulatory loci of one or more cell types

Significance-based Modules Integrating the Transcriptome and Epigenome