Software

A modular pipeline for the analysis of HELP microarray data; includes graphical and mathematical tools with more general applications. 

A package for the import, quality control, analysis, and visualization of methylation data generated using Sequenom's MassArray platform.

Significance-based Modules Integrating the Transcriptome and Epigenome

Mosaic Aneuploidy Detection and Quantification using Massive Parallel Sequencing Data

Disease diagnosis using phenotypes and genotypes.

Using the gaiaAssociation package to understand whether sets of genomic loci are enriched at the regulatory loci of one or more cell types